Publications – University of Copenhagen

RNAtrain > Publications

Publications

Here the publications produced by this project will be added continuously. Underlined are researchers from the RNA Train Consortium

Publications within RNA-Train Consortium

(81) Gao F, Wesolowska M, Agami R, Rooijers K, Loayza-Puch F, Lawless C, N Lightowlers R, M A Chrzanowska-Lightowlers Z. (2017). Using mitoribosomal profiling to investigate human mitochondrial translation. Wellcome Open Res. 2:116.
PMID: 29387808 [PubMed]

(80) Aldave G, Gonzalez-Huarriz M, Rubio A, Romero JP, Ravi D, Miñana B, Cuadrado-Tejedor M, García-Osta A, Verhaak R, Xipell E, Martinez-Vélez N, Acanda de la Rocha A, Puigdelloses M, García-Moure M, Marigil M, Gállego Pérez-Larraya J, Marín-Bejar O, Huarte M, Carro MS, Ferrarese R, Belda-Iniesta C, Ayuso A, Prat-Acín R, Pastor F, Díez-Valle R, Tejada S, Alonso MM. (2018).The aberrant splicing of BAF45d links splicing regulation and transcription in glioblastoma. Neuro Oncol. Jan 24;. [Epub ahead of print] PMID: 29373718 [PubMed - as supplied by publisher]

(79) Schöller E, Weichmann F, Treiber T, Ringle S, Treiber N, Flatley A, Feederle R, Bruckmann A, Meister G. (2018) Interactions, localization and phosphorylation of the m6A generating METTL3-METTL14-WTAP complex. RNA. Jan 18;. [Epub ahead of print] PMID: 29348140 [PubMed - as supplied by publisher]

(78) Milek M, Landthaler M. (2018) Systematic Detection of Poly(A+)- RNA-Interacting Proteins and Their Differential Binding. Methods Mol Biol. 1649:405-417. PMID: 29130213

(77) Mondal T, Subhash S, Kanduri C.(2018). Chromatin RNA Immunoprecipitation (ChRIP). Methods Mol Biol. 1689:65-76. PMID: 29027165 [PubMed - in process]

(76) Zavolan M, Kanitz A. (2017). RNA splicing and its connection with other regulatory layers in somatic cell reprogramming. Curr Opin Cell Biol. Dec 21;52:8-13. [Epub ahead of print] PMID: 29275148

(75) Gavish-Izakson M, Velpula BB, Elkon R, Prados-Carvajal R, Barnabas GD, Ugalde AP, Agami R, Geiger T, Huertas P, Ziv Y, Shiloh Y. (2017).Nuclear poly(A)-binding protein 1 is an ATM target and essential for DNA double-strand break repair. Nucleic Acids Res.Dec 14;. [Epub ahead of print] PMID: 29253183 [PubMed - as supplied by publisher]

(74) Svoboda P. (2017) Mammalian Zygotic Genome Activation. Semin Cell Dev Biol. Dec 9;. [Epub ahead of print] PMID: 29233752

(73) Huang Q, Yan J, Agami R. (2017) Long non-coding RNAs in metastasis. Cancer Metastasis Rev. Dec 11;. [Epub ahead of print] PMID: 29230620

(72) Han R, Slobodin B, Agami R. (2017) The methylated way to translation. Oncotarget. 2017 Nov 7;8(55):93313-93314. PMID: 29212149 [PubMed]

(71) Zavolan M, Graveley BR. (2017) RNAs: dynamic and mutable. Genome Biol. Nov 29;18(1):226. PMID: 29187228 [PubMed - in process]

(70) Reichardt I, Bonnay F, Steinmann V, Loedige I, Burkard TR, Meister G, Knoblich JA. (2017) The tumor suppressor Brat controls neuronal stem cell lineages by inhibiting Deadpan and Zelda. EMBO Rep. Nov 30;. [Epub ahead of print] PMID: 29191977

(69) Ribeiro DM, Zanzoni A, Cipriano A, Delli Ponti R, Spinelli L, Ballarino M, Bozzoni I, Tartaglia GG, Brun C. (2017). Protein complex scaffolding predicted as a prevalent function of long non-coding RNAs. Nucleic Acids Res. Nov 20;. [Epub ahead of print] PMID: 29165713 

(68)Kopparapu PK, Abdelrazak Morsy MH, Kanduri C, Kanduri M. (2017).Gene-body hypermethylation controlled cryptic promoter and miR26A1-dependent EZH2 regulation of TET1 gene activity in chronic lymphocytic leukemia. Oncotarget. Sep 29;8(44):77595-77608. PMID: 29100411

(67)Marchese FP, Raimondi I, Huarte M. (2017) The multidimensional mechanisms of long noncoding RNA function. Genome Biol. Oct 31;18(1):206. PMID: 29084573 [PubMed - in process]

(66) Marín-Béjar O, Mas AM, González J, Martinez D, Athie A, Morales X, Galduroz M, Raimondi I, Grossi E, Guo S, Rouzaut A, Ulitsky I, Huarte M.(2017) The human lncRNA LINC-PINT inhibits tumor cell invasion through a highly conserved sequence element. Genome Biol. 2017 Oct 27;18(1):202. PMID: 29078818 [PubMed - in process]

(65) Kopparapu PK, Abdelrazak Morsy MH, Kanduri C, Kanduri M. (2017)
Gene-body hypermethylation controlled cryptic promoter and miR26A1-dependent EZH2 regulation of TET1 gene activity in chronic lymphocytic leukemia.
Oncotarget. Sep 29;8(44):77595-77608. PMID: 29100411 [PubMed]

(64) Wyler E, Menegatti J, Franke V, Kocks C, Boltengagen A, Hennig T, Theil K, Rutkowski A, Ferrai C, Baer L, Kermas L, Friedel C, Rajewsky N, Akalin A, Dölken L, Grässer F, Landthaler M.(2017): Widespread activation of antisense transcription of the host genome during herpes simplex virus 1 infection. Genome Biol. 2017 Oct 31;18(1):209. PMID: 29089033

(63) Marchese FP, Raimondi I, Huarte M. (2017).The multidimensional mechanisms of long noncoding RNA function. Genome Biol. Oct 31;18(1):206. PMID: 29084573

(62) Marín-Béjar O, Mas AM, González J, Martinez D, Athie A, Morales X, Galduroz M, Raimondi I, Grossi E, Guo S, Rouzaut A, Ulitsky I, Huarte M. (2017) The human lncRNA LINC-PINT inhibits tumor cell invasion through a highly conserved sequence element. Genome Biol. Oct 27;18(1):202. PMID: 29078818

(61) Soares RJ, Maglieri G, Gutschner T, Diederichs S, Lund AH, Nielsen BS, Holmstr M K. (2017). Evaluation of fluorescence in situ hybridization techniques to study long non-coding RNA expression in cultured cells. Nucleic Acids Res. Oct 20;. PMID: 2905932710.1093/nar/gkx946

(60) Ujcikova H, Hlouskova M, Cechova K, Stolarova K, Roubalova L, Svoboda P. (2017)Determination of μ-, δ- and κ-opioid receptors in forebrain cortex of rats exposed to morphine for 10 days: Comparison with animals after 20 days of morphine withdrawal. PLoS One; 12(10):e0186797. PMID: 29053731 

(59) Martin G, Schmidt R, Gruber AJ, Ghosh S, Keller W, Zavolan M.(2017): 3' End Sequencing Library Preparation with A-seq2. J Vis Exp. Oct 10;(128). PMID: 29053696

(58) Svoboda P, Lindström ES, Ahmed Osman O, Langenheder S. (2017). Dispersal timing determines the importance of priority effects in bacterial communities. ISME J. Oct 20;. [Epub ahead of print] PMID: 29053147

(57)Heyam A, Coupland CE, Dégut C, Haley RA, Baxter NJ, Jakob L, Aguiar PM, Meister G, Williamson MP, Lagos D, Plevin MJ. Conserved asymmetry underpins homodimerization of Dicer-associated double-stranded RNA-binding proteins.Nucleic Acids Res. 2017 Oct 17;. [Epub ahead of print] PMID: 29045748 

(56) Raimondi I, Huarte M. (2017)
Noncoding RNAs as effective markers in cancer-care management.
Nat Med. Oct 6;23(10):1122-1123.
PMID: 28985204 [PubMed - in process]

(55) Hinze F, Drewe-Boß P, Milek M, Ohler U, Landthaler M, Gotthardt M.(2017)
Expanding the map of protein-RNA interaction sites via cell fusion followed by PAR-CLIP.
RNA Biol. Oct 13;:0. [Epub ahead of print]
PMID: 29028411 [PubMed - as supplied by publisher]

(54) De Santis R, Santini L, Colantoni A, Peruzzi G, de Turris V, Alfano V, Bozzoni I, Rosa A. (2017). FUS Mutant Human Motoneurons Display Altered Transcriptome and microRNA Pathways with Implications for ALS Pathogenesis.
Stem Cell Reports. Sep 28;. [Epub ahead of print]
PMID: 28988989

(53) Gumienny R, Jedlinski DJ, Schmidt A, Gypas F, Martin G, Vina-Vilaseca A & Zavolan M. (2017).High-throughput identification of C/D box snoRNA targets with CLIP and RiboMeth-seq. Nucleic Acids Res. Mar 17;45(5):2341-2353. doi: 10.1093/nar/gkw1321.

(52) Damas N, Marcatti M, Côme C, Christensen L, Nielsen M. M., Baumgartner R, Gylling H. M., Maglieri G, Rundsten C. F., Seemann S. E., Rapin N., Thézenas S., Vang S., Ørntoft T., Andersen C. L., Pedersen J. S. & Lund A.H (2016): SNHG5 promotes colorectal cancer cell survival by counteracting STAU1-mediated mRNA destabilization (2016). Nature Communications volume 7, Article number: 13875 , doi:10.1038/ncomms13875

(51) Danner J, Pai B, Wankerl L, Meister G (2016). Peptide-Based Inhibition of miRNA-Guided Gene Silencing. Methods Mol Biol. 2016;1517:199-210
DOI:10.1007/978-1-4939-6563-2_14

(50) Joao C. Guimaraes and Mihaela Zavolan (2016). Patterns of ribosomal protein expression specify normal and malignant human cells.  Genome Biology 17:236
https://doi.org/10.1186/s13059-016-1104-z

(49) Subhash S, Andersson PO, Kosalai ST, Kanduri C, Kanduri M (2016). Global DNA methylation profiling reveals new insights into epigenetically deregulated protein coding and long noncoding RNAs in CLL. Clin Epigenetics 8:106 DOI:10.1186/s13148-016-0274-6. Published online 12 October 2016.    

(48) Huarte M (2016). p53 partners with RNA in the DNA damage response. Nature Genetics Volume: 48, Pages:1298–1299 Doi:10.1038/ng.3702. Published 27 October 2016.

(47) Marchese FP, Huarte M (2016). A long noncoding RNA in DNA replication and chromosome dynamics. Cell Cycle Volume 13:1-2 DOI: 10.1080/15384101.2016.1241604. Published online 13 October 2016.

(46) Frankel LB, Lubas M, Lund AH (2016). Review: Emerging connections between RNA and autophagy. Autophagy Vol 12, No 11 Pages 1-21. DOI 10.1080/15548627.2016.1222992. Published online 7 October 2016. 

(45) Marchese FP, Grossi E, Marín-Béjar O, Bharti SK, Raimondi I, González J, Martínez-Herrera DJ, Athie A, Amadoz A, Brosh RM Jr, Huarte M (2016). A Long Noncoding RNA Regulates Sister Chromatid Cohesion. Molecular Cell Volume 63(3):397-407. doi: 10.1016/j.molcel.2016.06.031. Published 4 August 2016. 

(44) Häfner SJ, Talvard TG, Lund AH (2016). Long noncoding RNAs in normal and pathological pluripotency. Seminars in Cell & Developmental Biology  pii: S1084-9521(16)30206-3. doi: 10.1016/j.semcdb.2016.07.011. Published 18 July 2016.  

(43) Hasler D, Lehmann G, Murakawa Y, Klironomos F, Jakob L, Grässer FA, Rajewsky N, Landthaler M, Meister G (2016). The Lupus Autoantigen La Prevents Mis-channeling of tRNA Fragments into the Human MicroRNA Pathway. Molecular Cell 63(1):110-24 doi: 10.1016/j.molcel.2016.05.026. Published 7 July 2016.

(42) Lopes R, Korkmaz G, Agami R (2016). Applying CRISPR-Cas9 tools to identify and characterize transcriptional enhancers. Nature Reviews Molecular Cell Biology Volume 17:597-604. Doi:10.1038/nrm.2016.79. Published 6 July 2016.

(41) Gruber AJ, Schmidt R, Gruber AR, Martin G, Ghosh S, Belmadani M, Keller W, Zavolan M (2016). A comprehensive analysis of 3' end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and polyadenylation. Genome Res 26(8):1145-59 doi: 10.1101/gr.202432.115. Published 5 July 2016.

(40) Arribas-Hernández L, Marchais A, Poulsen C, Haase B, Hauptmann J, Benes V, Meister G, Brodersen P (2016). The Slicer Activity of ARGONAUTE1 Is Required Specifically for the Phasing, Not Production, of Trans-Acting Short Interfering RNAs in Arabidopsis. Plant Cell Volume 28(7):1563-80 doi: 10.1105/tpc.16.00121. Published online 27 June 2016. 

(39) Ballarino M, Morlando M, Fatica A, Bozzoni I (2016). Non-coding RNAs in muscle differentiation and musculoskeletal disease. The Journal of Clinical Investigation 126(6):2021-30 doi: 10.1172/JCI84419. Published online 1 June 2016.

(38) Krogh N, Jansson MD, Häfner S, Tehler D, Birkedal U, Christensen-Dalsgaard M, Lund AH, Nielsen H (2016). Profiling of 2′-O-Me in human rRNA reveals a subset of fractionally modified positions and provides evidence for ribosome heterogeneity. Nucleic Acids Research doi: 10.1093/nar/gkw482. First published online: 1 June 2016. 

(37) Antoine T, Ott D, Ebell K, Hansen K, Henry L, Backer F, Hannus S (2016). Homogeneous time-resolved G protein-coupled receptor–ligand binding assay based on fluorescence cross-correlation spectroscopy. Analytical Biochemistry Volume 502:24-35 doi: 10.1016/j.ab.2016.02.017. Published 1 June 2016. 

(36) Martin G, Zavolan M (2016). Redesigning CLIP for efficiency, accuracy and speed. Nature Methods Volume 13(6):482-3 doi: 10.1038/nmeth.3870. Published online 31 May 2016.

(35) Loayza-Puch F, Agami R (2016). Monitoring amino acid deficiencies in cancer. Cell Cycle Volume 15, Issue 17:2229-30. doi: 10.1080/15384101.2016.1191256. Published online 31 May 2016. 

(34) Jorjani H, Kehr S, Jedlinski DJ, Gumienny R, Hertel J, Stadler PF, Zavolan M, Gruber AR (2016). An updated human snoRNAome. Nucleic Acids Research 44(11):5068-82 doi: 10.1093/nar/gkw386. Published 12 May 2016.

(33) Kretz M, Medenbach J, Meister G (2016). Special issue: RNA biology in physiology and disease. Pflugers Arch 468(6):933-4 doi: 10.1007/s00424-016-1833-6. Published online 14 May 2016.

(32) Wessels HH, Imami K, Baltz AG, Kolinski M, Beldovskaya A, Selbach M, Small S, Ohler U, Landthaler M (2016). The mRNA-bound proteome of the early fly embryo. Genome Research 26(7):1000-9 doi: 10.1101/gr.200386.115. Published online 18 April 2016.

(31) Ganesh S, Svoboda P (2016). Retrotransposon-associated long non-coding RNAs in mice and men. Pflugers Arch 468(6):1049-60 doi: 10.1007/s00424-016-1818-5. Published online 5 April 2016.

(30) Svobodova E, Kubikova J, Svoboda P (2016). Production of small RNAs by mammalian Dicer. Pflugers Arch 468(6):1089-102  doi: 10.1007/s00424-016-1817-6. Published online 6 April 2016.

(29) Montes M, Lund AH (2016). Emerging roles of lncRNAs in senescence. The FEBS Journal Volume 283, Issue 13:2414-2426 DOI: 10.1111/febs.13679. Published 2 March 2016.

(28) Huarte M (2016). RNA. A lncRNA links genomic variation with celiac disease. Science 352(6281):43-4  doi: 10.1126/science.aaf6015. Published online 31 March 2016. 

(27) Hoffman Y, Bublik DR, Ugalde AP, Elkon R, Biniashivili T, Agami R, Oren M (2016). 3’UTR Shortening Potentiates MicroRNA-Based Repression of Pro-differentiation Genes in Proliferating Human Cells. PLOS Genetics http://dx.doi.org/10.1371/journal.pgen.1005879. Published 23 February 2016.

(26) Loayza-Puch F, Rooijers K, Buil LCM, Zijlstra J, Vrielink JFO, Lopes R, Ugalde AP, van Breugel P, Hofland I, Wesseling J, van Tellingen O, Bex A, Agami R (2016). Tumour-specific proline vulnerability uncovered by differential ribosome codon reading. Nature 530:490-494 doi:10.1038/nature16982. Published 25 February 2016. 

(25) Jakob L, Treiber T, Treiber N, Gust A, Kramm K, Hansen K, Stotz M, Wankerl L, Herzog F, Hannus S, Grohmann D, Meister G (2016). Structural and functional insights into the fly microRNA biogenesis factor Loquacious. RNA 22(3):383-96 doi: 10.1261/rna.055426.115. Published online 14 January 2016.

(24) Melo CA, Léveillé N, Rooijers K, Wijchers PJ, Geeven G, Tal A, Melo SA, de Laat W, Agami R (2016). A p53-bound enhancer region controls a long intergenic noncoding RNA required for p53 stress response. Oncogene 35(33):4399-406 doi: 10.1038/onc.2015.502. Published online January 18 2016.

(23) Martone J, Briganti F, Legnini I, Morlando M, Picillo E, Sthandier O, Politano L, Bozzoni I (2016). The lack of the Celf2a splicing factor converts a Duchenne genotype into a Becker phenotype. Nature Communications Volume 7, 10488 doi:10.1038/ncomms10488. Published 22 January 2016.  

(22) Korkmaz G, Lopes R, Ugalde AP, Nevedomskaya E, Han R, Myacheva K, Zwart W, Elkon R, Agami R (2016). Functional genetic screens for enhancer elements in the human genome using CRISPR-Cas9. Nature Biotechnol. 34(2):192-8 doi: 10.1038/nbt.3450. Published online 11 January 2016.

(21) Rzepiela AJ, Vina-Vilaseca A, Breda J, Ghosh S, Syed AP, Gruber AJ, Grandy WA, Eschbach K, Beisel C, van Nimwegen E, Zavolan M (2016). Exploiting variability of single cells to uncover the in vivo hierarchy of miRNA targets. BioRxiv doi: http://dx.doi.org/10.1101/035097. Published 23 December 2015.

(20) Loedige I, Jakob L, Treiber T, Ray D, Stotz M, Treiber N, Hennig J, Cook KB, Morris Q, Hughes TR, Engelmann J, Krahn MP, Meister G (2016). The Crystal Structure of the NHL Domain in Complex with RNA Reveals the Molecular Basis of Drosophila Brain-Tumor-Mediated Gene Regulation. Cell Reports Volume 13, Issue 6: 1206-1220 http://dx.doi.org/10.1016/j.celrep.2015.09.068. Published 10 November 2015.

(19) Elkon R, Loayza-Puch F, Korkmaz G, Lopes R, van Breugel PC, Bleijerveld OB, Altelaar AFM, Wolf E, Lorenzin F, Eilers M, Agami R (2016). Myc coordinates transcription and translation to enhance transformation and suppress invasiveness. EMBO reports e201540717 DOI 10.15252/embr.201540717. Published online 4 November 2015.  

(18) Huarte M (2015). The emerging role of lncRNAs in cancer. Nature medicine 21(11):1253-61 doi: 10.1038/nm.3981. Published 5 November 2015.

(17) Hauptmann J, Schraivogel D, Bruckmann A, Manickavel S, Jakob L, Eichner N, Pfaff J, Urban M, Sprunck S, Hafner M, Tuschl T, Deutzmann R, Meister G (2015). Biochemical isolation of Argonaute protein complexes by Ago-APP. Proc Natl Acad Sci USA 112(38):11841-5 doi: 10.1073/pnas.1506116112. Published online 8 September 2015.

(16) Svoboda P, Franke V, Schultz RM (2015). Sculpting the Transcriptome During the Oocyte-to-Embryo Transition in Mouse. Curr Top Dev Biol 113:305-49  doi: 10.1016/bs.ctdb.2015.06.004. Published online 29 July 2015.

(15) Subasic D, Brümmer A, Wu Y, Pinto SM, Imig J, Keller M, Jovanovic M, Lightfoot HL, Nasso S, Goetze S, Brunner E, Hall J, Aebersold R, Zavolan M, Hengartner MO (2015). Cooperative target mRNA destabilization and translation inhibition by miR-58 microRNA family in C. elegans. Genome Research doi: 10.1101/gr.183160.114. Published 31 July 2015.

(14) Mondal T, Subhash S, Vaid R, Enroth S, Uday S, Reinius B, Mitra S, Mohammed A, James AR, Hoberg E, Moustakas A, Gyllensten U, Jones SJM, Gustafsson CM, Sims AH, Westerlund F, Gorab E, Kanduri C (2015). MEG3 long noncoding RNA regulates the TGF-β pathway genes through formation of RNA–DNA triplex structures. Nature Communications 6, 7743 doi:10.1038/ncomms8743. Published 24 July 2015. 

(13) Zavolan M (2015). Inferring gene expression regulatory networks from high-throughput measurements. Methods 85:1-2  doi: 10.1016/j.ymeth.2015.07.006. Published 15 July 2015. 

(12) Grossi E, Sánchez Y & Huarte M. (2015). Expanding the p53 regulatory network: LncRNAs take up the challenge. Biochim Biophys Acta. 18. pii: S1874-9399(15)00163-7. doi: 10.1016/j.bbagrm.2015.07.011. Published 18 July 2015.

(11) Kanitz A, Gypas F, Gruber AJ, Gruber AR, Martin G & Zavolan M. (2015). Comparative assessment of methods for the computational inference of transcript isoform abundance from RNA-seq data. Genome Biol. 23;16:150. doi: 10.1186/s13059-015-0702-5. Published 23 July 2015.

(10) Schraivogel D, Schindler S, Danner J, Kremmer E, Pfaff J, Hannus S, Depping R, Meister G (2015). Importin-β facilitates nuclear import of human GW proteins and balances cytoplasmic gene silencing protein levels. Nucl Acids Res. doi: 10.1093/nar/gkv705. Published 13 July 2015. 

(9) Murakawa Y, Hinz M, Mothes J, Schuetz A, Uhl M, Wyler E, Yasuda T, Mastrobuoni G, Friedel CC, Dölken L, Kempa S, Schmidt-Supprian M, Blüthgen N, Backofen R, Heinemann U, Wolf J, Scheidereit C, & Landthaler M (2015). RC3H1 post-transcriptionally regulates A20 mRNA and modulates the activity of the IKK/NF-κB pathway. Nature Communications 6, Article number: 7367, doi:10.1038/ncomms8367. Published 14 July 2015.

(8) Wen J, Leucci E, Vendramin R, Kauppinen S, Lund AH, Krogh A, Parker BJ. (2015)Transcriptome dynamics of the microRNA inhibition response. Nucleic Acids Res. 27;43(13):6207-21. doi: 10.1093/nar/gkv603. Epub 2015 Jun 18.

(7) Pandey GK, Kanduri C. (2015) Long noncoding RNAs and neuroblastoma.
Oncotarget. 30;6 (21):18265-75. Published 30 July 2015.

(6) Kanduri C. (2015). Long noncoding RNAs: Lessons from genomic imprinting.
Biochim Biophys Acta. 2015 May 22. pii: S1874-9399(15)00104-2. doi: 10.1016/j.bbagrm.2015.05.006. Published 22 May 2015.

(5) Lenzi J, De Santis R, de Turris V, Morlando M, Laneve P, Calvo A, Caliendo V, Chiò A, Rosa A, Bozzoni I. (2015). ALS mutant FUS proteins are recruited into stress granules in induced pluripotent stem cell-derived motoneurons.
Dis Model Mech. 1;8 (7):755-66. doi: 10.1242/dmm.020099. Epub 2015 Apr 23.

(4) Svoboda, P. (2015) A toolbox for miRNA analysis. FEBS Lett. 22;589 (14):1694-701. doi: 10.1016/j.febslet.2015.04.054. Epub 2015 May 7.

(3) Breda J, Rzepiela AJ, Gumienny R, van Nimwegen E, Zavolan M (2015). Quantifying the strength of miRNA-target interactions. Methods 85:90-9. doi:10.1016/j.ymeth. Epub 2015 Apr 6.

(2) Montes, M, Nielsen, M M, Maglieri, G, Jacobsen, A., Højfeldt, Agrawal-Singh, S., Hansen, K., Helin, K., van de Werken, H., Pedersen, J., & Lund, AH. (2015). The lncRNA MIR31HG regulates p16INK4A expression to modulate senescence. Nature Communications Volume 6. (available online) doi:10.1038/ncomms7967.

(1) Loedige I, Jakob L, Treiber T, Ray D, Stotz M, Treiber N, Hennig J, Cook KB, Morris Q, Hughes TR, Engelmann JC, Krahn MP, Meister G. (2015). The Crystal Structure of the NHL Domain in Complex with RNA Reveals the Molecular Basis of Drosophila Brain-Tumor-Mediated Gene Regulation. Cell Reports, Volume 13, Issue 6, Pages 1206–122